Sarker Lab Emory University

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TABLE Game 1 Game 2 Game 3 Total
Anna 144 123 218 485
Bill 90 175 120 385
Cara 102 214 233 549

It was the best of times it was the worst of times. It was the age of wisdom, it was the age of foolishness. It was the spring of hope, it was the winter of despair.

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Jekyll Spaceship

Stage Direct Products ATP Yields
Glycolysis
2 ATP  
2 NADH 3–5 ATP
Pyruvaye oxidation 2 NADH 5 ATP
Citric acid cycle

2 ATP  
6 NADH 15 ATP
2 FADH 3 ATP
30–32 ATP    

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2n13

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List

List citations

2025

Machine Learning and Natural Language Processing to Improve Classification of Atrial Septal Defects in Electronic Health Records
Yuting Guo, Haoming Shi, Wendy M Book, Lindsey Carrie Ivey, Fred H Rodriguez III, Reza Sameni, Cheryl Raskind‐Hood, Chad Robichaux, Karrie F Downing, Abeed Sarker
Mar 2025         Cite
Building community through data: the value of a researcher driven open science ecosystem
Meredith CB Adams, Carla M Bann, Emine Ozgur Bayman, Maria Chao, Georgene W Hergenroeder, ..., Ty A Ridenour, Lissette M Saavedra, Abeed Sarker, Kevin J Anstrom, Wesley K Thompson
Jan 2025         Cite
Applications of Natural Language Processing and Large Language Models for Social Determinants of Health: Protocol for a Systematic Review
Swati Rajwal, Ziyuan Zhang, Yankai Chen, Hannah Rogers, Abeed Sarker, Yunyu Xiao
Jan 2025         Cite
Two-Layer Retrieval-Augmented Generation Framework for Low-Resource Medical Question Answering Using Reddit Data: Proof-of-Concept Study
Sudeshna Das, Yao Ge, Yuting Guo, Swati Rajwal, JaMor Hairston, ..., Rachel Wightman, Jennifer Love, Anthony Spadaro, Jeanmarie Perrone, Abeed Sarker
Jan 2025         Cite
Characterization of Reddit Posts on Nitazenes
Jeanmarie Perrone, Jennifer Love, JaMor Hairston, Sahithi Lakamana, Abeed Sarker
Feb 2025         Cite
The Digital Narrative: Chronic Pain Self-Management Insights from Reddit in Systemic Lupus Erythematosus
Selen Bozkurt, Andrew Walker, Tricia Park, Nathan Le, Abeed Sarker, Anushka Irani, Titilola Falasinnu
Apr 2025         Cite

2024

Evaluating Large Language Models for Health-Related Text Classification Tasks with Public Social Media Data
Yuting Guo, Anthony Ovadje, Mohammed Ali Al-Garadi, Abeed Sarker
Oct 2024         Cite
Risk Factors for Adverse Outcomes in a Fontan Population
Giancarlo Licitra, Lindsey Ivey, Cheryl Raskind-Hood, Fred Rodriguez, Yuting Guo, ABEED SARKER, Wendy Book
Nov 2024         Cite
Heart failure is time-dependent and associated with heart transplant, hepatocellular carcinoma, and death in the Fontan population
Lindsey Ivey, Cheryl Raskind-Hood, Alexandra Haffner, Yuting Guo, ABEED SARKER, Fred Rodriguez, Wendy Book
Nov 2024         Cite
Unveiling Voices: Identification of Concerns in a Social Media Breast Cancer Cohort via Natural Language Processing
Swati Rajwal, Avinash Kumar Pandey, Zhishuo Han, Abeed Sarker
May 2024         Cite
Emerging Trends of Self-Harm Using Sodium Nitrite in an Online Suicide Community: Observational Study Using Natural Language Processing Analysis
Sudeshna Das, Drew Walker, Swati Rajwal, Sahithi Lakamana, Steven A Sumner, ..., Wojciech Kaczkowski, Abeed Sarker, Marco Helbich, Yi Zeng, Abeed Sarker
May 2024         Cite
Characterizing Social Environments in the Physical and Virtual Worlds Using Digital Data
Michele C. Weigle, José Balsa-Barreiro, Nitesh V. Chawla, Tamas Dávid-Barrett, Maria Melchior, Virginia Pallante, Abeed Sarker, Jason Gilliland
Jul 2024         Cite
Social Media as a Sensor: Analyzing Twitter Data for Breast Cancer Medication Effects Using Natural Language Processing
Seibi Kobara, Alireza Rafiei, Masoud Nateghi, Selen Bozkurt, Rishikesan Kamaleswaran, Abeed Sarker
Jul 2024         Cite
Can Adverse Childhood Experiences Predict Chronic Health Conditions? Development of Trauma-Informed, Explainable Machine Learning Models
Hanin B. Afzal, Tasfia Jahangir, Yiyang Mei, Annabelle Madden, Abeed Sarker, Sangmi Kim
Jan 2024         Cite
Data Augmentation with Nearest Neighbor Classifier for Few-Shot Named Entity Recognition
Yao Ge, Mohammed Ali Al-Garadi, Abeed Sarker
Jan 2024         Cite
Leveraging Large Language Models for Analyzing Blood Pressure Variations Across Biological Sex from Scientific Literature
Yuting Guo, Seyedeh Somayyeh Mousavi, Reza Sameni, Abeed Sarker
Feb 2024         Cite
Analysis of Expressions of Hope and Regret Associated with Nonmedical Prescription Drug Use in X Chatter
Fazlourrahman Balouchzahi, Sabur Butt, Abeed Sarker, Al-Garadi MA, Grigori Sidorov, Alexander Gelbukh
Feb 2024         Cite
CARE-SD: classifier-based analysis for recognizing provider stigmatizing and doubt marker labels in electronic health records: model development and validation
Andrew Walker, Annie Thorne, Sudeshna Das, Jennifer Love, Hannah LF Cooper, Melvin Livingston III, Abeed Sarker
Dec 2024         Cite
A large language model–based generative natural language processing framework fine‐tuned on clinical notes accurately extracts headache frequency from electronic health records
Chia‐Chun Chiang, Man Luo, Gina Dumkrieger, Shubham Trivedi, Yi‐Chieh Chen, Chieh‐Ju Chao, Todd J Schwedt, Abeed Sarker, Imon Banerjee
Apr 2024         Cite

2023

Automatic Detection of Twitter Users Who Express Chronic Stress Experiences via Supervised Machine Learning and Natural Language Processing
Yuan-Chi Yang, Angel Xie, Sangmi Kim, Jessica Hair, Mohammed Al-Garadi, Abeed Sarker
Sep 2023         Cite
A Large Language Model-Based Generative Natural Language Processing Framework Finetuned on Clinical Notes Accurately Extracts Headache Frequency from Electronic Health Records
Chia-Chun Chiang, Man Luo, Gina Dumkrieger, Shubham Trivedi, Yi-Chieh Chen, Chieh-Ju Chao, Todd J Schwedt, Abeed Sarker, Imon Banerjee
Oct 2023         Cite
Emerging Trends in Self-Harm: Sodium Nitrite and an Online Suicide Community
Sudeshna Das, Drew Walker, Swati Rajwal, Sahithi Lakamana, Steven A Sumner, Karin A Mack, Wojciech Kaczkowski, Abeed Sarker
Oct 2023         Cite
An Aspect-Level Sentiment Analysis Dataset for Therapies on Twitter
Yuting Guo, Sudeshna Das, Sahithi Lakamana, Abeed Sarker
Oct 2023         Cite
Interface of Gun Violence and Intimate Partner Violence: Survivors’ Narrative on Social Media
Grace Landram, Ayush Kothari, Sahithi Lakamana, Abeed Sarker, Sangmi Kim
Nov 2023         Cite
Overview of the 8th Social Media Mining for Health Applications (#SMM4H) Shared Tasks at the AMIA 2023 Annual Symposium
Ari Z Klein, Juan M Banda, Yuting Guo, Ana Lucia Schmidt, Dongfang Xu, Jesus Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez
Nov 2023         Cite
Public Perceptions About Monkeypox on Twitter: Thematic Analysis
Abimbola Leslie, Omolola Okunromade, Abeed Sarker
Nov 2023         Cite
SocBERT: A Pretrained Model for Social Media Text
Yuting Guo, Abeed Sarker
May 2023         Cite
Generalizable Natural Language Processing Framework for Migraine Reporting from Social Media
Yuting Guo, Swati Rajwal, Sahithi Lakamana, Chia-Chun Chiang, Paul C Menell, ..., Wan-Ju Chao, Chieh-Ju Chao, Todd J Schwedt, Imon Banerjee, Abeed Sarker
Mar 2023         Cite
Supervised Text Classification System Detects Fontan Patients in Electronic Records With Higher Accuracy Than ICD Codes
Yuting Guo, Mohammed A Al‐Garadi, Wendy M Book, Lindsey C Ivey, Fred H Rodriguez III, Cheryl L Raskind‐Hood, Chad Robichaux, Abeed Sarker
Mar 2023         Cite
Self-reported Xylazine Experiences: A Mixed Methods Study of Reddit Subscribers
Anthony Spadaro, Karen O’ Connor, Sahithi Lakamana, Abeed Sarker, Rachel Wightman, Jennifer S Love, Jeanmarie Perrone
Mar 2023         Cite
The Early Detection of Fraudulent COVID-19 Products From Twitter Chatter: Data Set and Baseline Approach Using Anomaly Detection
Abeed Sarker, Sahithi Lakamana, Ruqi Liao, Aamir Abbas, Yuan-Chi Yang, Mohammed Al-Garadi
Mar 2023         Cite
Automatic Detection of Intimate Partner Violence Victims from Social Media for Proactive Delivery of Support
Yuting Guo, Sangmi Kim, Elise Warren, Yuan-Chi Yang, Sahithi Lakamana, Abeed Sarker
Mar 2023         Cite
Can Accurate Demographic Information About People Who Use Prescription Medications Nonmedically Be Derived From Twitter?
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S Love, Hannah LF Cooper, Jeanmarie Perrone, Abeed Sarker
Mar 2023         Cite
Classification of Fall Types in Parkinson's Disease from Self-report Data Using Natural Language Processing
Jeanne M Powell, Yuting Guo, Abeed Sarker, J Lucas McKay
Jun 2023         Cite
ChronicPain: Automated Building of a Chronic Pain Cohort from Twitter Using Machine Learning
Abeed Sarker, Sahithi Lakamana, Yuting Guo, Yao Ge, Abimbola Leslie, Omolola Okunromade, Elena Gonzalez-Polledo, Jeanmarie Perrone, Anne Marie McKenzie-Brown
Jul 2023         Cite
Few-shot learning for medical text: A review of advances, trends, and opportunities
Yao Ge, Yuting Guo, Sudeshna Das, Mohammed Ali Al-Garadi, Abeed Sarker
Jul 2023         Cite
A Framework for Multi-Faceted Content Analysis of Social Media Chatter Regarding Non-medical Use of Prescription Medications
Shaina Raza, Brian Schwartz, Sahithi Lakamana, Yao Ge, Abeed Sarker
Aug 2023         Cite
Barriers to Opioid Use Disorder Treatment: A Comparison of Self-Reported Information from Social Media with Barriers Found in Literature
Whitney Bremer, Karma Plaisance, Drew Walker, Matthew Bonn, Jennifer S Love, Jeanmarie Perrone, Abeed Sarker
Apr 2023         Cite
An analysis of cannabinoid hyperemesis syndrome Reddit posts and themes
Rachel S. Wightman, Jeanmarie Perrone, Alexandra B. Collins, Sahithi Lakamana, Abeed Sarker
Apr 2023         Cite
Characteristics of Intimate Partner Violence and Survivor’s Needs During the COVID-19 Pandemic: Insights From Subreddits Related to Intimate Partner Violence
Sangmi Kim, Elise Warren, Tasfia Jahangir, Mohammed Al-Garadi, Yuting Guo, Yuan-Chi Yang, Sahithi Lakamana, Abeed Sarker
Apr 2023         Cite

2022

Natural Language Model for Automatic Identification of Intimate Partner Violence Reports From Twitter
Yuting Guo, Yao Ge, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Sep 2022         Cite
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022
Davy Weissenbacher, Juan Banda, Vera Davydova, Darryl Estrada Zavala, Luis Gasco Sánchez, ..., Raul Rodriguez-Esteban, Abeed Sarker, Lucia Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
Oct 2022         Cite
Self Reported Xylazine Exposure and Experiences: A Mixed Methods Study of Reddit Users
Anthony Spadaro, Abeed Sarker, Jeanmarie Perrone
Nov 2022         Cite
Automatic Detection of Twitter Users Who Express Chronic Stress Experiences via Supervised Machine Learning and Natural Language Processing
Yuan-Chi Yang, Angel Xie, Sangmi Kim, Jessica Hair, Mohammed Al-Garadi, Abeed Sarker
Nov 2022         Cite
A Supervised Classification Model Detects Fontan Patients Based on Clinical Notes With Higher Accuracy Than ICD Codes
Yuting Guo, Mohammed A Al-Garadi, Wendy M Book, Lindsey Ivey, Fred H Rodriguez, Cheryl L Raskind-Hood, Abeed Sarker
Nov 2022         Cite
Signals of Increasing CO-Use of Stimulants and Opioids From Online Drug Forum Data
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Christopher M Jones, Steven A Sumner
May 2022         Cite
Early Detection Of Fraudulent Covid-19 Products From Twitter Chatter
Abeed Sarker, Sahithi Lakamana, Ruqi Liao, Aamir Abbas, Yuan-Chi Yang, Mohammed Al-Garadi
May 2022         Cite
Tracking The Covid-19 Outbreak In India Through Twitter: Opportunities For Social Media Based Global Pandemic Surveillance
Sahithi Lakamana, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Mar 2022         Cite
Deepluenza: Deep Learning for Influenza Detection from Twitter
Balsam Alkouz, Zaher Al Aghbari, Mohammed Al Al-Garadi, Abeed Sarker
Mar 2022         Cite
Concerns Among People Who Use Opioids During The Covid-19 Pandemic: A Natural Language Processing Analysis Of Social Media Posts
Abeed Sarker, Nisha Nataraj, Wesley Siu, Sabrina Li, Christopher M Jones, Steven A Sumner
Mar 2022         Cite
Automatic Identification Of Intimate Partner Violence Victims From Social Media
Mohammed Al-Garadi, Abeed Sarker, Yuting Guo, Elise Warren, Yuan-Chi Yang, Sangmi Kim
Mar 2022         Cite
Building a Social Media Platform for Surveillance and Support of Intimate Partner Violence and Its Victims During COVID-19 and Beyond: Preliminary Findings
Sangmi Kim, Mohammed Al-Garadi, Yuting Guo, Elise Warren, Kaylee Stephenson, Yuan-Chi Yang, Abeed Sarker
Jun 2022         Cite
A Comparison of Few-Shot and Traditional Named Entity Recognition Models for Medical Text
Yao Ge, Yuting Guo, Yuna-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Jun 2022         Cite
Thematic Analysis of Reddit Content About Buprenorphine-Naloxone Using Manual Annotation and Natural Language Processing Techniques
Rachel Lynn Graves, Jeanmarie Perrone, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jennifers Love, Karen O’Connor, Graciela Gonzalez-Hernandez, Abeed Sarker
Jul 2022         Cite
Trends in Co-mention of Stimulants and Opioids: A Natural Language Processing Driven Analysis of Reddit Forums
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Christopher M Jones, Steven A Sumner
Jan 2022         Cite
Reddit Discussions About Buprenorphine Associated Precipitated Withdrawal In The Era Of Fentanyl
Anthony Spadaro, Abeed Sarker, Whitney Hogg-Bremer, Jennifer S Love, Nicole O’Donnell, Lewis S Nelson, Jeanmarie Perrone
Feb 2022         Cite
Evidence of the Emergence of Illicit Benzodiazepines From Online Drug Forums
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Londell McGlone, Christopher M Jones, Steven A Sumner
Dec 2022         Cite
Comparison of Pretraining Models and Strategies for Health-Related Social Media Text Classification
Yuting Guo, Yao Ge, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Aug 2022         Cite
Large-Scale Social Media Analysis Reveals Emotions Associated with Nonmedical Prescription Drug Use
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Yuting Guo, Sangmi Kim, Jennifer S Love, Jeanmarie Perrone, Abeed Sarker
Apr 2022         Cite
Few-shot Learning For Medical Text: A Systematic Review
Yao Ge, Yuting Guo, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Apr 2022         Cite
Can Reddit Posts Reveal Insurance Related Barriers to Accessing Medication for Opioid Use Disorder?
Whitney Bremer, Abeed Sarker, Jeanmarie Perrone
Apr 2022         Cite
Can Accurate Demographic Information About People Who Use Prescription Medications Non-medically Be Derived From Twitter Big Data?
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S. Love, Hannah L. F. Cooper, Jeanmarie Perrone, Abeed Sarker
Apr 2022         Cite

2021

Defining Patient-Oriented Natural Language Processing: A New Paradigm for Research and Development to Facilitate Adoption and Use by Medical Experts
Abeed Sarker, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jinho Choi, Arshed A Quyyumi, Greg S Martin
Sep 2021         Cite
Developing an Automatic System for Classifying Chatter About Health Services on Twitter: Case Study for Medicaid
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Whitney Bremer, Jane M. Zhu, David Grande, Abeed Sarker
May 2021         Cite
Syndromic Surveillance for COVID-19 from Reddit using Multi-Platform Lexicons
Abimbola Leslie, Sahithi Lakamana, Abeed Sarker
Mar 2021         Cite
CoviDash-SM: A Public COVID-19 Dashboard for Social Media Data-Based Research and Surveillance
Sahithi Lakamana, Mohammad Ali Al-Garadi, Yuan-Chi Yang, Abeed Sarker
Mar 2021         Cite
Pre-Trained Transformer-Based Classification and Span Detection Models for Social Media Health Applications
Yuting Guo, Yao Ge, Mohammad Ali Al-Garadi, Abeed Sarker
Jun 2021         Cite
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammad Ali Al-Garadi, Ilseyar Alimova, ..., Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
Jun 2021         Cite
Automatic Gender Detection in Twitter Profiles for Health-Related Cohort Studies
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S. Love, Jeanmarie Perrone, Abeed Sarker
Jun 2021         Cite
Text Classification Models for the Automatic Detection of Nonmedical Prescription Medication Use from Social Media
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker
Jan 2021         Cite
Utilizing a Multi-Class Classification Approach to Detect Therapeutic and Recreational Misuse of Opioids on Twitter
Samah Jamal Fodeh, Mohammed Al-Garadi, Osama Elsankary, Jeanmarie Perrone, William Becker, Abeed Sarker
Feb 2021         Cite
Thematic Analysis of Reddit Content About Buprenorphine-naloxone Using Manual Annotation and Natural Language Processing Techniques
Rachel Lynn Graves, Jeanmarie Perrone, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jennifer S Love, Karen O’Connor, Graciela Gonzalez-Hernandez, Abeed Sarker
Dec 2021         Cite
Methadone and Suboxone® Mentions on Twitter: Thematic and Sentiment Analysis
Megan Chenworth, Jeanmarie Perrone, Jennifer Love, Rachel Graves, Whitney Hogg-Bremer, Abeed Sarker
Apr 2021         Cite
Gender Differences in Nonmedical Use of Prescription Opioids, Tranquilizers and Stimulant Medications Using Machine Learning and Social Media
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer Love, Jeanmarie Perrone, Abeed Sarker
Apr 2021         Cite

2020

Utilizing a Multi-Class Classification Approach to Detect Therapeutic and Recreational Misuse of Opioids on Twitter
Samah Jamal Fodeh, Mohammad Al-Garadi, Osama Elsankary, Jeanmarie Perrone, William Becker, Abeed Sarker
Nov 2020         Cite
Towards Automatic Bot Detection in Twitter for Health-related Tasks
Anahita Davoudi, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez-Hernandez
May 2020         Cite
Automatic Breast Cancer Cohort Detection from Social Media for Studying Factors Affecting Patient Centered Outcomes
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Sahithi Lakamana, Jie Lin, Sabrina Li, Angel Xie, Whitney Hogg-Bremer, Mylin Torres, Imon Banerjee, Abeed Sarker
May 2020         Cite
Buprenorphine Initiation in the Emergency Department: A Thematic Content Analysis of a #firesidetox Tweetchat
Megan Chenworth, Jeanmarie Perrone, Jennifer S. Love, Howard A. Greller, Abeed Sarker, Peter R. Chai
Jan 2020         Cite
Promoting Reproducible Research for Characterizing Nonmedical Use of Medications Through Data Annotation: Description of a Twitter Corpus and Guidelines
Karen O'Connor, Abeed Sarker, Jeanmarie Perrone, Graciela Gonzalez-Hernandez
Feb 2020         Cite
Benchmarking of Transformer-Based Pre-Trained Models on Social Media Text Classification Datasets
Yuting Guo, Xiangjue Dong, Mohammed Ali Al-Garadi, Abeed Sarker, Cécile Paris, Diego Mollá-Aliod
Dec 2020         Cite
A Light-Weight Text Summarization System for Fast Access to Medical Evidence
Abeed Sarker, Yuan-Chi Yang, Mohammad Ali Al-Garadi
Dec 2020         Cite
Self-Reported COVID-19 Symptoms on Twitter: An Analysis and a Research Resource
Abeed Sarker, Sahithi Lakamana, Whitney Hogg-Bremer, Angel Xie, Mohammed Ali Al-Garadi, Yuan-Chi Yang
Aug 2020         Cite
Assessing Perceptions about Medications for Opioid Use Disorder and Naloxone on Twitter
Babak Tofighi, Omar El Shahawy, Andrew Segoshi, Katerine P Moreno, Beita Badiei, Abeed Sarker, Noa Krawczyk
Aug 2020         Cite
Characteristics of Twitter Use by State Medicaid Programs in the United States: A Machine Learning Application
Jane M. Zhu, Abeed Sarker, Sarah Gollust, Raina Merchant, David Grande
Aug 2020         Cite

2019

Towards Scaling Twitter for Digital Epidemiology of Birth Defects
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Oct 2019         Cite
Machine Learning and Natural Language Processing for Geolocation-Centric Monitoring and Characterization of Opioid-Related Social Media Chatter
Abeed Sarker, Graciela Gonzalez-Hernandez, Yucheng Ruan, Jeanmarie Perrone
Nov 2019         Cite
Towards Real-Time Opioid Abuse Surveillance: Machine Learning for Automatic Characterization of Opioid-Related Tweets
Abeed Sarker, Graciela Gonzalez-Hernandez, Francis DeRoos, Jeanmarie Perrone
May 2019         Cite
Characterizing Opioid-Related Tweets: A Comparison Between Prescription and Illicit Opioid Chatter
Abeed Sarker, Graciela Gonzalez-Hernandez, Francis DeRoos, Jeanmarie Perrone
May 2019         Cite
An Analysis of a Twitter Corpus for Training a Medication Intake Classifier
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
May 2019         Cite
Can Reddit Reveal Unique Facets of Suboxone Use and Misuse?
Rachel Graves, Jeanmarie Perrone, Jennifer Love, Abeed Sarker
Mar 2019         Cite
Comment on: Deep Learning for Pharmacovigilance: Recurrent Neural Network Architectures for Labeling Adverse Drug Reactions in Twitter Posts
Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Jun 2019         Cite
Bi-Directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Jan 2019         Cite
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
Dec 2019         Cite
Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods
Abeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone
Aug 2019         Cite
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019
Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn Daughton, Karen O'Connor, Michael Paul, Graciela Gonzalez-Hernandez
Aug 2019         Cite
Data-Driven Lexical Normalization for Medical Social Media
Anne Dirkson, Abeed Sarker, Wessel Kraaij, Suzan Verberne
Aug 2019         Cite
An Interpretable Natural Language Processing System for Written Medical Examination Assessment
Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez
Aug 2019         Cite

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2023

Mining Social Media Big Data for Toxicovigilance: Studying Substance Use via NLP and Machine Learning Methods
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According to the World Health Organization, toxicovigilance is the active process of identifying and evaluating the toxic risks existing in a community, and evaluating the measures taken to reduce or eliminate them. Our toxicovigilance research focuses on prescription and illicit drug use/misuse and drug use... Read More

Automatic Detection of Intimate Partner Violence Victims
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Self-Report IPV on Twitter Intimate partner violence (IPV) is a preventable public health problem that affects millions of people worldwide. Approximately one in four women are estimated to be or have been victims of severe violence at some point in their lives, irrespective of age,... Read More

Generalizable NLP Framework for Migraine Reporting from Social Media
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Abstract Migraine is a highly prevalent and disabling neurological disorder. However, information about migraine management in real-world settings is limited to traditional health information sources. In this paper, we (i) verify that there is substantial migraine-related chatter available on social media (Twitter and Reddit), self-reported... Read More

Classification of Fall Types in Parkinson's Disease From Self-report Data Using NLP
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Introduction Falls can result from multiple types of biomechanical perturbations, including perturbations to an individual’s base of support (BoS; e.g., trips) or center of mass (CoM; e.g., overextension during bending) [1]. People with Parkinson;s disease are more likely to fall and be frequent fallers than... Read More

Few-shot Learning for Biomedical NER
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Few-shot learning (FSL) is a class of machine learning methods that require small numbers of labeled instances for training. With many medical topics having limited annotated text-based data in practical settings, FSL-based natural language processing (NLP) holds substantial promise. However, there is no current study... Read More

Trends in Substance-Induced Self-Harm
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Background In recent years, there has been a concerning increase in suicides and self-harm cases, both in the United States and across the world. In the United States, suicide rates have been steadily rising among different age groups and demographics. Globally, suicide rates also remain... Read More

Identification of Fontan Patients
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Background The Fontan operation palliates single ventricle heart defects and is associated with significant morbidity and premature mortality. Native anatomy varies; thus, Fontan cases cannot always be identified by International Classification of Diseases, Ninth and Tenth Revision, Clinical Modification (ICD-9-CM and ICD-10-CM) codes, making it... Read More

Identification of Transgender Patients
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Introduction Transgender people are a group of individuals whose gender identity and gender expression differ from their sex assigned at birth. The importance of transgender health research has gained increasing recognition in recent years with specific focus on mental health, cardiovascular diseases cancer, and other... Read More

2020

Breast Cancer Research with Social Media Data
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This study proposes a natural language processing (NLP) architecture to detect breast cancer patients on Twitter based on their self-reports. By utilizing breast cancer related keywords and employing a machine learning classifier, the architecture achieves high accuracy in distinguishing firsthand self-reports of breast cancer, offering... Read More

COVID-19 and Social Media
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This page contains resources associated with multiple studies (completed and ongoing) focusing on COVID-19 Dashboards Research topics/studies: Syndromic surveillance: we are utilizing real-time social media data, natural language processing and machine learning methods to identify and track symptom distributions over time. Localized outbreak detection: we... Read More

Social Media Mining
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Social media is a source of massive amounts of information. Social media is accessible by large populations and it contains large amounts of health-related chatter posted by users themselves. Therefore, social media often contains health-related information that may not be available from any other sources.... Read More

Text Summarization For Medical Evidence
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A light-weight Text Summarization System for fast access to medical evidence. Overview As the volume of published medical research continues to grow rapidly, staying up to date with the best-available research evidence regarding specific topics is becoming an increasingly challenging problem for medical experts and... Read More

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2025

Machine Learning and Natural Language Processing to Improve Classification of Atrial Septal Defects in Electronic Health Records
Yuting Guo, Haoming Shi, Wendy M Book, Lindsey Carrie Ivey, Fred H Rodriguez III, Reza Sameni, Cheryl Raskind‐Hood, Chad Robichaux, Karrie F Downing, Abeed Sarker
Mar 2025         Cite
Building community through data: the value of a researcher driven open science ecosystem
Meredith CB Adams, Carla M Bann, Emine Ozgur Bayman, Maria Chao, Georgene W Hergenroeder, ..., Ty A Ridenour, Lissette M Saavedra, Abeed Sarker, Kevin J Anstrom, Wesley K Thompson
Jan 2025         Cite
Applications of Natural Language Processing and Large Language Models for Social Determinants of Health: Protocol for a Systematic Review
Swati Rajwal, Ziyuan Zhang, Yankai Chen, Hannah Rogers, Abeed Sarker, Yunyu Xiao
Jan 2025         Cite
Two-Layer Retrieval-Augmented Generation Framework for Low-Resource Medical Question Answering Using Reddit Data: Proof-of-Concept Study
Sudeshna Das, Yao Ge, Yuting Guo, Swati Rajwal, JaMor Hairston, ..., Rachel Wightman, Jennifer Love, Anthony Spadaro, Jeanmarie Perrone, Abeed Sarker
Jan 2025         Cite
Characterization of Reddit Posts on Nitazenes
Jeanmarie Perrone, Jennifer Love, JaMor Hairston, Sahithi Lakamana, Abeed Sarker
Feb 2025         Cite
The Digital Narrative: Chronic Pain Self-Management Insights from Reddit in Systemic Lupus Erythematosus
Selen Bozkurt, Andrew Walker, Tricia Park, Nathan Le, Abeed Sarker, Anushka Irani, Titilola Falasinnu
Apr 2025         Cite

2024

Evaluating Large Language Models for Health-Related Text Classification Tasks with Public Social Media Data
Yuting Guo, Anthony Ovadje, Mohammed Ali Al-Garadi, Abeed Sarker
Oct 2024         Cite
Risk Factors for Adverse Outcomes in a Fontan Population
Giancarlo Licitra, Lindsey Ivey, Cheryl Raskind-Hood, Fred Rodriguez, Yuting Guo, ABEED SARKER, Wendy Book
Nov 2024         Cite
Heart failure is time-dependent and associated with heart transplant, hepatocellular carcinoma, and death in the Fontan population
Lindsey Ivey, Cheryl Raskind-Hood, Alexandra Haffner, Yuting Guo, ABEED SARKER, Fred Rodriguez, Wendy Book
Nov 2024         Cite
Unveiling Voices: Identification of Concerns in a Social Media Breast Cancer Cohort via Natural Language Processing
Swati Rajwal, Avinash Kumar Pandey, Zhishuo Han, Abeed Sarker
May 2024         Cite
Emerging Trends of Self-Harm Using Sodium Nitrite in an Online Suicide Community: Observational Study Using Natural Language Processing Analysis
Sudeshna Das, Drew Walker, Swati Rajwal, Sahithi Lakamana, Steven A Sumner, ..., Wojciech Kaczkowski, Abeed Sarker, Marco Helbich, Yi Zeng, Abeed Sarker
May 2024         Cite
Characterizing Social Environments in the Physical and Virtual Worlds Using Digital Data
Michele C. Weigle, José Balsa-Barreiro, Nitesh V. Chawla, Tamas Dávid-Barrett, Maria Melchior, Virginia Pallante, Abeed Sarker, Jason Gilliland
Jul 2024         Cite
Social Media as a Sensor: Analyzing Twitter Data for Breast Cancer Medication Effects Using Natural Language Processing
Seibi Kobara, Alireza Rafiei, Masoud Nateghi, Selen Bozkurt, Rishikesan Kamaleswaran, Abeed Sarker
Jul 2024         Cite
Can Adverse Childhood Experiences Predict Chronic Health Conditions? Development of Trauma-Informed, Explainable Machine Learning Models
Hanin B. Afzal, Tasfia Jahangir, Yiyang Mei, Annabelle Madden, Abeed Sarker, Sangmi Kim
Jan 2024         Cite
Data Augmentation with Nearest Neighbor Classifier for Few-Shot Named Entity Recognition
Yao Ge, Mohammed Ali Al-Garadi, Abeed Sarker
Jan 2024         Cite
Leveraging Large Language Models for Analyzing Blood Pressure Variations Across Biological Sex from Scientific Literature
Yuting Guo, Seyedeh Somayyeh Mousavi, Reza Sameni, Abeed Sarker
Feb 2024         Cite
Analysis of Expressions of Hope and Regret Associated with Nonmedical Prescription Drug Use in X Chatter
Fazlourrahman Balouchzahi, Sabur Butt, Abeed Sarker, Al-Garadi MA, Grigori Sidorov, Alexander Gelbukh
Feb 2024         Cite
CARE-SD: classifier-based analysis for recognizing provider stigmatizing and doubt marker labels in electronic health records: model development and validation
Andrew Walker, Annie Thorne, Sudeshna Das, Jennifer Love, Hannah LF Cooper, Melvin Livingston III, Abeed Sarker
Dec 2024         Cite
A large language model–based generative natural language processing framework fine‐tuned on clinical notes accurately extracts headache frequency from electronic health records
Chia‐Chun Chiang, Man Luo, Gina Dumkrieger, Shubham Trivedi, Yi‐Chieh Chen, Chieh‐Ju Chao, Todd J Schwedt, Abeed Sarker, Imon Banerjee
Apr 2024         Cite

2023

Automatic Detection of Twitter Users Who Express Chronic Stress Experiences via Supervised Machine Learning and Natural Language Processing
Yuan-Chi Yang, Angel Xie, Sangmi Kim, Jessica Hair, Mohammed Al-Garadi, Abeed Sarker
Sep 2023         Cite
A Large Language Model-Based Generative Natural Language Processing Framework Finetuned on Clinical Notes Accurately Extracts Headache Frequency from Electronic Health Records
Chia-Chun Chiang, Man Luo, Gina Dumkrieger, Shubham Trivedi, Yi-Chieh Chen, Chieh-Ju Chao, Todd J Schwedt, Abeed Sarker, Imon Banerjee
Oct 2023         Cite
Emerging Trends in Self-Harm: Sodium Nitrite and an Online Suicide Community
Sudeshna Das, Drew Walker, Swati Rajwal, Sahithi Lakamana, Steven A Sumner, Karin A Mack, Wojciech Kaczkowski, Abeed Sarker
Oct 2023         Cite
An Aspect-Level Sentiment Analysis Dataset for Therapies on Twitter
Yuting Guo, Sudeshna Das, Sahithi Lakamana, Abeed Sarker
Oct 2023         Cite
Interface of Gun Violence and Intimate Partner Violence: Survivors’ Narrative on Social Media
Grace Landram, Ayush Kothari, Sahithi Lakamana, Abeed Sarker, Sangmi Kim
Nov 2023         Cite
Overview of the 8th Social Media Mining for Health Applications (#SMM4H) Shared Tasks at the AMIA 2023 Annual Symposium
Ari Z Klein, Juan M Banda, Yuting Guo, Ana Lucia Schmidt, Dongfang Xu, Jesus Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez
Nov 2023         Cite
Public Perceptions About Monkeypox on Twitter: Thematic Analysis
Abimbola Leslie, Omolola Okunromade, Abeed Sarker
Nov 2023         Cite
SocBERT: A Pretrained Model for Social Media Text
Yuting Guo, Abeed Sarker
May 2023         Cite
Generalizable Natural Language Processing Framework for Migraine Reporting from Social Media
Yuting Guo, Swati Rajwal, Sahithi Lakamana, Chia-Chun Chiang, Paul C Menell, ..., Wan-Ju Chao, Chieh-Ju Chao, Todd J Schwedt, Imon Banerjee, Abeed Sarker
Mar 2023         Cite
Supervised Text Classification System Detects Fontan Patients in Electronic Records With Higher Accuracy Than ICD Codes
Yuting Guo, Mohammed A Al‐Garadi, Wendy M Book, Lindsey C Ivey, Fred H Rodriguez III, Cheryl L Raskind‐Hood, Chad Robichaux, Abeed Sarker
Mar 2023         Cite
Self-reported Xylazine Experiences: A Mixed Methods Study of Reddit Subscribers
Anthony Spadaro, Karen O’ Connor, Sahithi Lakamana, Abeed Sarker, Rachel Wightman, Jennifer S Love, Jeanmarie Perrone
Mar 2023         Cite
The Early Detection of Fraudulent COVID-19 Products From Twitter Chatter: Data Set and Baseline Approach Using Anomaly Detection
Abeed Sarker, Sahithi Lakamana, Ruqi Liao, Aamir Abbas, Yuan-Chi Yang, Mohammed Al-Garadi
Mar 2023         Cite
Automatic Detection of Intimate Partner Violence Victims from Social Media for Proactive Delivery of Support
Yuting Guo, Sangmi Kim, Elise Warren, Yuan-Chi Yang, Sahithi Lakamana, Abeed Sarker
Mar 2023         Cite
Can Accurate Demographic Information About People Who Use Prescription Medications Nonmedically Be Derived From Twitter?
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S Love, Hannah LF Cooper, Jeanmarie Perrone, Abeed Sarker
Mar 2023         Cite
Classification of Fall Types in Parkinson's Disease from Self-report Data Using Natural Language Processing
Jeanne M Powell, Yuting Guo, Abeed Sarker, J Lucas McKay
Jun 2023         Cite
ChronicPain: Automated Building of a Chronic Pain Cohort from Twitter Using Machine Learning
Abeed Sarker, Sahithi Lakamana, Yuting Guo, Yao Ge, Abimbola Leslie, Omolola Okunromade, Elena Gonzalez-Polledo, Jeanmarie Perrone, Anne Marie McKenzie-Brown
Jul 2023         Cite
Few-shot learning for medical text: A review of advances, trends, and opportunities
Yao Ge, Yuting Guo, Sudeshna Das, Mohammed Ali Al-Garadi, Abeed Sarker
Jul 2023         Cite
A Framework for Multi-Faceted Content Analysis of Social Media Chatter Regarding Non-medical Use of Prescription Medications
Shaina Raza, Brian Schwartz, Sahithi Lakamana, Yao Ge, Abeed Sarker
Aug 2023         Cite
Barriers to Opioid Use Disorder Treatment: A Comparison of Self-Reported Information from Social Media with Barriers Found in Literature
Whitney Bremer, Karma Plaisance, Drew Walker, Matthew Bonn, Jennifer S Love, Jeanmarie Perrone, Abeed Sarker
Apr 2023         Cite
An analysis of cannabinoid hyperemesis syndrome Reddit posts and themes
Rachel S. Wightman, Jeanmarie Perrone, Alexandra B. Collins, Sahithi Lakamana, Abeed Sarker
Apr 2023         Cite
Characteristics of Intimate Partner Violence and Survivor’s Needs During the COVID-19 Pandemic: Insights From Subreddits Related to Intimate Partner Violence
Sangmi Kim, Elise Warren, Tasfia Jahangir, Mohammed Al-Garadi, Yuting Guo, Yuan-Chi Yang, Sahithi Lakamana, Abeed Sarker
Apr 2023         Cite

2022

Natural Language Model for Automatic Identification of Intimate Partner Violence Reports From Twitter
Yuting Guo, Yao Ge, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Sep 2022         Cite
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022
Davy Weissenbacher, Juan Banda, Vera Davydova, Darryl Estrada Zavala, Luis Gasco Sánchez, ..., Raul Rodriguez-Esteban, Abeed Sarker, Lucia Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
Oct 2022         Cite
Self Reported Xylazine Exposure and Experiences: A Mixed Methods Study of Reddit Users
Anthony Spadaro, Abeed Sarker, Jeanmarie Perrone
Nov 2022         Cite
Automatic Detection of Twitter Users Who Express Chronic Stress Experiences via Supervised Machine Learning and Natural Language Processing
Yuan-Chi Yang, Angel Xie, Sangmi Kim, Jessica Hair, Mohammed Al-Garadi, Abeed Sarker
Nov 2022         Cite
A Supervised Classification Model Detects Fontan Patients Based on Clinical Notes With Higher Accuracy Than ICD Codes
Yuting Guo, Mohammed A Al-Garadi, Wendy M Book, Lindsey Ivey, Fred H Rodriguez, Cheryl L Raskind-Hood, Abeed Sarker
Nov 2022         Cite
Signals of Increasing CO-Use of Stimulants and Opioids From Online Drug Forum Data
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Christopher M Jones, Steven A Sumner
May 2022         Cite
Early Detection Of Fraudulent Covid-19 Products From Twitter Chatter
Abeed Sarker, Sahithi Lakamana, Ruqi Liao, Aamir Abbas, Yuan-Chi Yang, Mohammed Al-Garadi
May 2022         Cite
Tracking The Covid-19 Outbreak In India Through Twitter: Opportunities For Social Media Based Global Pandemic Surveillance
Sahithi Lakamana, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Mar 2022         Cite
Deepluenza: Deep Learning for Influenza Detection from Twitter
Balsam Alkouz, Zaher Al Aghbari, Mohammed Al Al-Garadi, Abeed Sarker
Mar 2022         Cite
Concerns Among People Who Use Opioids During The Covid-19 Pandemic: A Natural Language Processing Analysis Of Social Media Posts
Abeed Sarker, Nisha Nataraj, Wesley Siu, Sabrina Li, Christopher M Jones, Steven A Sumner
Mar 2022         Cite
Automatic Identification Of Intimate Partner Violence Victims From Social Media
Mohammed Al-Garadi, Abeed Sarker, Yuting Guo, Elise Warren, Yuan-Chi Yang, Sangmi Kim
Mar 2022         Cite
Building a Social Media Platform for Surveillance and Support of Intimate Partner Violence and Its Victims During COVID-19 and Beyond: Preliminary Findings
Sangmi Kim, Mohammed Al-Garadi, Yuting Guo, Elise Warren, Kaylee Stephenson, Yuan-Chi Yang, Abeed Sarker
Jun 2022         Cite
A Comparison of Few-Shot and Traditional Named Entity Recognition Models for Medical Text
Yao Ge, Yuting Guo, Yuna-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Jun 2022         Cite
Thematic Analysis of Reddit Content About Buprenorphine-Naloxone Using Manual Annotation and Natural Language Processing Techniques
Rachel Lynn Graves, Jeanmarie Perrone, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jennifers Love, Karen O’Connor, Graciela Gonzalez-Hernandez, Abeed Sarker
Jul 2022         Cite
Trends in Co-mention of Stimulants and Opioids: A Natural Language Processing Driven Analysis of Reddit Forums
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Christopher M Jones, Steven A Sumner
Jan 2022         Cite
Reddit Discussions About Buprenorphine Associated Precipitated Withdrawal In The Era Of Fentanyl
Anthony Spadaro, Abeed Sarker, Whitney Hogg-Bremer, Jennifer S Love, Nicole O’Donnell, Lewis S Nelson, Jeanmarie Perrone
Feb 2022         Cite
Evidence of the Emergence of Illicit Benzodiazepines From Online Drug Forums
Abeed Sarker, Mohammed Ali Al-Garadi, Yao Ge, Nisha Nataraj, Londell McGlone, Christopher M Jones, Steven A Sumner
Dec 2022         Cite
Comparison of Pretraining Models and Strategies for Health-Related Social Media Text Classification
Yuting Guo, Yao Ge, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Aug 2022         Cite
Large-Scale Social Media Analysis Reveals Emotions Associated with Nonmedical Prescription Drug Use
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Yuting Guo, Sangmi Kim, Jennifer S Love, Jeanmarie Perrone, Abeed Sarker
Apr 2022         Cite
Few-shot Learning For Medical Text: A Systematic Review
Yao Ge, Yuting Guo, Yuan-Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker
Apr 2022         Cite
Can Reddit Posts Reveal Insurance Related Barriers to Accessing Medication for Opioid Use Disorder?
Whitney Bremer, Abeed Sarker, Jeanmarie Perrone
Apr 2022         Cite
Can Accurate Demographic Information About People Who Use Prescription Medications Non-medically Be Derived From Twitter Big Data?
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S. Love, Hannah L. F. Cooper, Jeanmarie Perrone, Abeed Sarker
Apr 2022         Cite

2021

Defining Patient-Oriented Natural Language Processing: A New Paradigm for Research and Development to Facilitate Adoption and Use by Medical Experts
Abeed Sarker, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jinho Choi, Arshed A Quyyumi, Greg S Martin
Sep 2021         Cite
Developing an Automatic System for Classifying Chatter About Health Services on Twitter: Case Study for Medicaid
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Whitney Bremer, Jane M. Zhu, David Grande, Abeed Sarker
May 2021         Cite
Syndromic Surveillance for COVID-19 from Reddit using Multi-Platform Lexicons
Abimbola Leslie, Sahithi Lakamana, Abeed Sarker
Mar 2021         Cite
CoviDash-SM: A Public COVID-19 Dashboard for Social Media Data-Based Research and Surveillance
Sahithi Lakamana, Mohammad Ali Al-Garadi, Yuan-Chi Yang, Abeed Sarker
Mar 2021         Cite
Pre-Trained Transformer-Based Classification and Span Detection Models for Social Media Health Applications
Yuting Guo, Yao Ge, Mohammad Ali Al-Garadi, Abeed Sarker
Jun 2021         Cite
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammad Ali Al-Garadi, Ilseyar Alimova, ..., Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
Jun 2021         Cite
Automatic Gender Detection in Twitter Profiles for Health-Related Cohort Studies
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer S. Love, Jeanmarie Perrone, Abeed Sarker
Jun 2021         Cite
Text Classification Models for the Automatic Detection of Nonmedical Prescription Medication Use from Social Media
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker
Jan 2021         Cite
Utilizing a Multi-Class Classification Approach to Detect Therapeutic and Recreational Misuse of Opioids on Twitter
Samah Jamal Fodeh, Mohammed Al-Garadi, Osama Elsankary, Jeanmarie Perrone, William Becker, Abeed Sarker
Feb 2021         Cite
Thematic Analysis of Reddit Content About Buprenorphine-naloxone Using Manual Annotation and Natural Language Processing Techniques
Rachel Lynn Graves, Jeanmarie Perrone, Mohammed Ali Al-Garadi, Yuan-Chi Yang, Jennifer S Love, Karen O’Connor, Graciela Gonzalez-Hernandez, Abeed Sarker
Dec 2021         Cite
Methadone and Suboxone® Mentions on Twitter: Thematic and Sentiment Analysis
Megan Chenworth, Jeanmarie Perrone, Jennifer Love, Rachel Graves, Whitney Hogg-Bremer, Abeed Sarker
Apr 2021         Cite
Gender Differences in Nonmedical Use of Prescription Opioids, Tranquilizers and Stimulant Medications Using Machine Learning and Social Media
Yuan-Chi Yang, Mohammed Ali Al-Garadi, Jennifer Love, Jeanmarie Perrone, Abeed Sarker
Apr 2021         Cite

2020

Utilizing a Multi-Class Classification Approach to Detect Therapeutic and Recreational Misuse of Opioids on Twitter
Samah Jamal Fodeh, Mohammad Al-Garadi, Osama Elsankary, Jeanmarie Perrone, William Becker, Abeed Sarker
Nov 2020         Cite
Towards Automatic Bot Detection in Twitter for Health-related Tasks
Anahita Davoudi, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez-Hernandez
May 2020         Cite
Automatic Breast Cancer Cohort Detection from Social Media for Studying Factors Affecting Patient Centered Outcomes
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Sahithi Lakamana, Jie Lin, Sabrina Li, Angel Xie, Whitney Hogg-Bremer, Mylin Torres, Imon Banerjee, Abeed Sarker
May 2020         Cite
Buprenorphine Initiation in the Emergency Department: A Thematic Content Analysis of a #firesidetox Tweetchat
Megan Chenworth, Jeanmarie Perrone, Jennifer S. Love, Howard A. Greller, Abeed Sarker, Peter R. Chai
Jan 2020         Cite
Promoting Reproducible Research for Characterizing Nonmedical Use of Medications Through Data Annotation: Description of a Twitter Corpus and Guidelines
Karen O'Connor, Abeed Sarker, Jeanmarie Perrone, Graciela Gonzalez-Hernandez
Feb 2020         Cite
Benchmarking of Transformer-Based Pre-Trained Models on Social Media Text Classification Datasets
Yuting Guo, Xiangjue Dong, Mohammed Ali Al-Garadi, Abeed Sarker, Cécile Paris, Diego Mollá-Aliod
Dec 2020         Cite
A Light-Weight Text Summarization System for Fast Access to Medical Evidence
Abeed Sarker, Yuan-Chi Yang, Mohammad Ali Al-Garadi
Dec 2020         Cite
Self-Reported COVID-19 Symptoms on Twitter: An Analysis and a Research Resource
Abeed Sarker, Sahithi Lakamana, Whitney Hogg-Bremer, Angel Xie, Mohammed Ali Al-Garadi, Yuan-Chi Yang
Aug 2020         Cite
Assessing Perceptions about Medications for Opioid Use Disorder and Naloxone on Twitter
Babak Tofighi, Omar El Shahawy, Andrew Segoshi, Katerine P Moreno, Beita Badiei, Abeed Sarker, Noa Krawczyk
Aug 2020         Cite
Characteristics of Twitter Use by State Medicaid Programs in the United States: A Machine Learning Application
Jane M. Zhu, Abeed Sarker, Sarah Gollust, Raina Merchant, David Grande
Aug 2020         Cite

2019

Towards Scaling Twitter for Digital Epidemiology of Birth Defects
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Oct 2019         Cite
Machine Learning and Natural Language Processing for Geolocation-Centric Monitoring and Characterization of Opioid-Related Social Media Chatter
Abeed Sarker, Graciela Gonzalez-Hernandez, Yucheng Ruan, Jeanmarie Perrone
Nov 2019         Cite
Towards Real-Time Opioid Abuse Surveillance: Machine Learning for Automatic Characterization of Opioid-Related Tweets
Abeed Sarker, Graciela Gonzalez-Hernandez, Francis DeRoos, Jeanmarie Perrone
May 2019         Cite
Characterizing Opioid-Related Tweets: A Comparison Between Prescription and Illicit Opioid Chatter
Abeed Sarker, Graciela Gonzalez-Hernandez, Francis DeRoos, Jeanmarie Perrone
May 2019         Cite
An Analysis of a Twitter Corpus for Training a Medication Intake Classifier
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
May 2019         Cite
Can Reddit Reveal Unique Facets of Suboxone Use and Misuse?
Rachel Graves, Jeanmarie Perrone, Jennifer Love, Abeed Sarker
Mar 2019         Cite
Comment on: Deep Learning for Pharmacovigilance: Recurrent Neural Network Architectures for Labeling Adverse Drug Reactions in Twitter Posts
Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Jun 2019         Cite
Bi-Directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Jan 2019         Cite
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
Dec 2019         Cite
Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods
Abeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone
Aug 2019         Cite
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019
Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn Daughton, Karen O'Connor, Michael Paul, Graciela Gonzalez-Hernandez
Aug 2019         Cite
Data-Driven Lexical Normalization for Medical Social Media
Anne Dirkson, Abeed Sarker, Wessel Kraaij, Suzan Verberne
Aug 2019         Cite
An Interpretable Natural Language Processing System for Written Medical Examination Assessment
Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez
Aug 2019         Cite

Grid of blog posts

2023

Mining Social Media Big Data for Toxicovigilance: Studying Substance Use via NLP and Machine Learning Methods
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According to the World Health Organization, toxicovigilance is the active process of identifying and evaluating the toxic risks existing in a community, and evaluating the measures taken to reduce or eliminate them. Our toxicovigilance research focuses on prescription and illicit drug use/misuse and drug use... Read More

Automatic Detection of Intimate Partner Violence Victims
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Self-Report IPV on Twitter Intimate partner violence (IPV) is a preventable public health problem that affects millions of people worldwide. Approximately one in four women are estimated to be or have been victims of severe violence at some point in their lives, irrespective of age,... Read More

Generalizable NLP Framework for Migraine Reporting from Social Media
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Abstract Migraine is a highly prevalent and disabling neurological disorder. However, information about migraine management in real-world settings is limited to traditional health information sources. In this paper, we (i) verify that there is substantial migraine-related chatter available on social media (Twitter and Reddit), self-reported... Read More

Classification of Fall Types in Parkinson's Disease From Self-report Data Using NLP
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Introduction Falls can result from multiple types of biomechanical perturbations, including perturbations to an individual’s base of support (BoS; e.g., trips) or center of mass (CoM; e.g., overextension during bending) [1]. People with Parkinson;s disease are more likely to fall and be frequent fallers than... Read More

Few-shot Learning for Biomedical NER
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Few-shot learning (FSL) is a class of machine learning methods that require small numbers of labeled instances for training. With many medical topics having limited annotated text-based data in practical settings, FSL-based natural language processing (NLP) holds substantial promise. However, there is no current study... Read More

Trends in Substance-Induced Self-Harm
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Background In recent years, there has been a concerning increase in suicides and self-harm cases, both in the United States and across the world. In the United States, suicide rates have been steadily rising among different age groups and demographics. Globally, suicide rates also remain... Read More

Identification of Fontan Patients
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Background The Fontan operation palliates single ventricle heart defects and is associated with significant morbidity and premature mortality. Native anatomy varies; thus, Fontan cases cannot always be identified by International Classification of Diseases, Ninth and Tenth Revision, Clinical Modification (ICD-9-CM and ICD-10-CM) codes, making it... Read More

Identification of Transgender Patients
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Introduction Transgender people are a group of individuals whose gender identity and gender expression differ from their sex assigned at birth. The importance of transgender health research has gained increasing recognition in recent years with specific focus on mental health, cardiovascular diseases cancer, and other... Read More

2020

Breast Cancer Research with Social Media Data
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This study proposes a natural language processing (NLP) architecture to detect breast cancer patients on Twitter based on their self-reports. By utilizing breast cancer related keywords and employing a machine learning classifier, the architecture achieves high accuracy in distinguishing firsthand self-reports of breast cancer, offering... Read More

COVID-19 and Social Media
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This page contains resources associated with multiple studies (completed and ongoing) focusing on COVID-19 Dashboards Research topics/studies: Syndromic surveillance: we are utilizing real-time social media data, natural language processing and machine learning methods to identify and track symptom distributions over time. Localized outbreak detection: we... Read More

Social Media Mining
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Social media is a source of massive amounts of information. Social media is accessible by large populations and it contains large amounts of health-related chatter posted by users themselves. Therefore, social media often contains health-related information that may not be available from any other sources.... Read More

Text Summarization For Medical Evidence
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A light-weight Text Summarization System for fast access to medical evidence. Overview As the volume of published medical research continues to grow rapidly, staying up to date with the best-available research evidence regarding specific topics is becoming an increasingly challenging problem for medical experts and... Read More

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const test = "Lorem ipsum dolor sit amet";
const test = "Lorem ipsum dolor sit amet";
const test = "Lorem ipsum dolor sit amet";